!***************************************************************************** ! XDSCONV converts XDS-files to serve as input to a variety of ! structure solution and refinement program packages. ! It can produce files in the following format : ! CCP4 amplitudes and their anomalous differences for the CCP4 package ! CCP4_F amplitudes {F,F(+),F(-)} for the CCP4 package ! CCP4_I intensities {IMEAN,I(+),I(-)} for use by CCP4's 'truncate' ! CNS structure factor amplitudes for the CNS (X-PLOR) package ! SHELX intensities for use by the SHELX package ! XtalView structure factor amplitudes for use by XtalView ! For details see chapter 'XDSVONV:Output formats' of the XDS documentation. ! ! The converted XDS reflection files may inherit test-reflections previously ! used for calculation of the free R-factor by any of the packages. ! If required, XDSCONV also converts intensities to structure factors. ! ! XDSCONV.INP contains named parameters and their values for running XDSCONV. ! Characters in a line to the right of an exclamation mark are comment. ! NOTE: Each input line has 80 characters. Parameters and values placed ! outside this range become invisible to XDSCONV. ! ! ! EXAMPLE of XDSCONV.INP for converting MAD data sets to CNS input format ! ======================================================================= ! !Assume that three data sets collected from a selenomethionyl protein !crystal at different wavelengths are available from a previous run of !the scaling program XSCALE (XSCALE output data sets fae-ip.ahkl, !fae-pk.ahkl, and fae-rm.ahkl; see example in the xscale documentation). !Each of the three intensity data sets is converted by a separate run !of XDSCONV into a structure factor data set in a format acceptable to !CNS. The input parameter values for XDSCONV.INP are shown below for !the conversion fae-ip.ahkl --> fae-ip.cv . In a similar way the other two !data sets, fae-pk.cv and fae-rm.cv, are obtained by running XDSCONV after !the appropriate changes to XDSCONV.INP have been made. The converted files !fae-ip.cv, fae-pk.cv, and fae-rm.cv may then be used directly for input to !CNS (CNS input file "merge.inp"). !***************************************************************************** !name and format (optional) of XDS-file INPUT_FILE=fae-ip.ahkl !XDS_ASCII UNIQUE OLDHKL ANOMAL NORMAL !File-name and output format suitable for target software-package OUTPUT_FILE=fae-ip.cv CNS !CCP4 CCP4_F CCP4_I SHELX XtalView !This creates new test-reflections from a fraction of the input reflections !GENERATE_FRACTION_OF_TEST_REFLECTIONS=0.05 !If you want to keep old test-reflections (all or only a fraction of them) !INHERIT_TEST_REFLECTIONS_FROM_FILE=old.hkl SHELX !INHERIT_FRACTION_OF_TEST_REFLECTIONS=1.0 !Default is to keep them all (1.0) !Specify whether intensity data obey Wilson statistics or not. Optional. !WILSON_STATISTICS=FALSE !TRUE !Default is TRUE !This omits reflections with I/sigma(I) below a specified cut-off !NEGATIVE_INTENSITY_CUTOFF=-3 !SPACE_GROUP_NUMBER=19 !if omitted taken from header of input file !UNIT_CELL_CONSTANTS=65.46 108.41 113.15 90.000 90.000 90.000 !FRIEDEL'S_LAW=FALSE !TRUE !INCLUDE_RESOLUTION_RANGE=20 1.6 !MERGE=FALSE !TRUE